Primers are designed to amplify sequences present only in the vector backbone. If a correct homologous recombination has occurred then no product should be amplified. If a product is detected it strongly suggests an incorrect targeting event or a multiple insertion event.
Not all vector primers will be present in all backbones – please refer to the tables below on which primers to use.
Please note that the absence of a product does not necessarily prove that the targeting is correct and this test should be used in conjunction with others
|
Primer
|
Sequence
|
|
VF1_F
|
CTCCTTTCGCTTTCTTCCCT
|
|
VF1_R
|
GCGAAAAACCGTCTATCAGG
|
|
VF2_F
|
TTGATTTGGGTGATGGTTCA
|
|
VF2_R
|
GAAATCGGCAACATCCCTTA
|
|
VF4_F
|
GTAGCTGACATTCATCCGGG
|
|
VF4_R
|
CTTTTCTACGGGGTCTGACG
|
|
VF5_F
|
CGAACGACCTACACCGAACT
|
|
VF5_R
|
AAAGATACCAGGCGTTTCCC
|
|
VF6_F
|
CAGCATGCCTGCTATTGTCT
|
|
VF6_R
|
TAGTTGCCAGCCATCTGTTG
|
|
VF7_F
|
GTGGCGCTTTCTCATAGCTC
|
|
VF7_R
|
GCCTACATACCTCGCTCTGC
|
|
VF8_F
|
ATAATACCGCGCCACATAGC
|
|
VF8_R
|
TTTGCCTTCCTGTTTTTGCT
|
|
Vector
|
VF1_F
|
VF1_R
|
VF2_F
|
VF2_R
|
VF4_F
|
VF4_R
|
VF5_F
|
VF5_R
|
VF6_F
|
VF6_R
|
VF7_F
|
VF7_R
|
VF8_F
|
VF8_R
|
|
L3L4_pZero_DTA_kan
|
y
|
y
|
n
|
n
|
y
|
y
|
y
|
y
|
n
|
n
|
n
|
n
|
n
|
n
|
|
|
y
|
y
|
y
|
y
|
y
|
y
|
y
|
y
|
n
|
n
|
n
|
n
|
n
|
n
|
|
|
n
|
n
|
n
|
n
|
n
|
y
|
y
|
y
|
y
|
y
|
n
|
n
|
n
|
n
|
|
|
n
|
n
|
n
|
n
|
n
|
y
|
y
|
y
|
y
|
y
|
n
|
n
|
n
|
n
|
|
|
n
|
n
|
n
|
n
|
n
|
n
|
n
|
n
|
n
|
n
|
y
|
y
|
y
|
y
|