IKMC Project Report - EUCOMM (ID: 119501)

Idh1 MGI:96413 ENSMUSG00000025950 OTTMUSG00000021898
Pre-pipeline Designs Vectors ES Cells Mice
ES Cells - No QC Positives

Mice no data available

Mutagenesis Predictions

This gene has 3 wild type transcripts, of which 3 are protein-coding. Following removal of the floxed region, 3 transcripts are predicted to produce a truncated protein product of which 2 may be subject to non-sense mediated decay (NMD). The original allele for this mutation is of type ''. The table below shows the predicted structure of the gene transcripts after application of Flp and Cre (forming a 'Knockout-First, Post-Flp and Cre - Deletion, No Reporter' allele - more information on IKMC alleles can be found here). Click the 'view' button for each transcript to see the full prediction for that transcript.

Ensembl transcript id Ensembl Biotype Floxed transcript description Details
ENSMUST00000097709 protein_coding No protein product (NMD) view

Predicted translation:

MSRKIQGGSVVEMQGDEMTRIIWELIKEKLILPYVELDLHSYDLGIENRDATNDQVTKDAAEAIKKYNVGVKCATITPDE
KRVEEFKLKQMWKSPNGTIRNILGGTVFREAIICKNIPRLVTGWVKPIIIGRHAYGDQKVVVLPWACTTRISQLKTLHTV
PSKWLCPRAGLCISAPRTLF*

Ensembl Exon ID Pfam Domains WildType Floxed
ENSMUSE00000816551 UTR UTR
ENSMUSE00000154434 IsoPropMal-DH-like_dom (30/389 aa) UTR + start codon + CDS UTR + start codon + CDS
ENSMUSE00000154432 IsoPropMal-DH-like_dom (98/389 aa) CDS CDS
ENSMUSE00000154433 IsoPropMal-DH-like_dom (36/389 aa) CDS Deleted
ENSMUSE00000154431 IsoPropMal-DH-like_dom (60/389 aa) CDS CDS + stop codon + UTR
ENSMUSE00000154428 IsoPropMal-DH-like_dom (52/389 aa) CDS
ENSMUSE00000154429 IsoPropMal-DH-like_dom (48/389 aa) CDS
ENSMUSE00000154435 IsoPropMal-DH-like_dom (55/389 aa) CDS
ENSMUSE00000629806 IsoPropMal-DH-like_dom (16/389 aa) CDS + stop codon + UTR
Legend: in frame deleted frameshifted
ENSMUST00000169032 protein_coding No protein product (NMD) view

Predicted translation:

MSRKIQGGSVVEMQGDEMTRIIWELIKEKLILPYVELDLHSYDLGIENRDATNDQVTKDAAEAIKKYNVGVKCATITPDE
KRVEEFKLKQMWKSPNGTIRNILGGTVFREAIICKNIPRLVTGWVKPIIIGRHAYGDQKVVVLPWACTTRISQLKTLHTV
PSKWLCPRAGLCISAPRTLF*

Ensembl Exon ID Pfam Domains WildType Floxed
ENSMUSE00000913704 UTR UTR
ENSMUSE00000154434 IsoPropMal-DH-like_dom (30/389 aa) UTR + start codon + CDS UTR + start codon + CDS
ENSMUSE00000154432 IsoPropMal-DH-like_dom (98/389 aa) CDS CDS
ENSMUSE00000154433 IsoPropMal-DH-like_dom (36/389 aa) CDS Deleted
ENSMUSE00000154431 IsoPropMal-DH-like_dom (60/389 aa) CDS CDS + stop codon + UTR
ENSMUSE00000154428 IsoPropMal-DH-like_dom (52/389 aa) CDS
ENSMUSE00000154429 IsoPropMal-DH-like_dom (48/389 aa) CDS
ENSMUSE00000154435 IsoPropMal-DH-like_dom (55/389 aa) CDS
ENSMUSE00000897676 IsoPropMal-DH-like_dom (16/389 aa) CDS + stop codon + UTR
Legend: in frame deleted frameshifted
ENSMUST00000149310 protein_coding No analysis available: incomplete transcript
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ES Cell Clones no data available

Targeting Vectors no data available

Intermediate Vectors no data available