IKMC Project Report - KOMP-CSD (ID: 35051)

Cyp2c39 MGI:1306818 ENSMUSG00000025003 OTTMUSG00000028407
Pre-pipeline Designs Vectors ES Cells Mice
Vector - Initial Attempt Unsuccessful

Mice no data available

Mutagenesis Predictions

This gene has 1 wild type transcripts, of which 1 are protein-coding. Following removal of the floxed region, 1 transcript is predicted to produce a truncated protein product of which 1 may be subject to non-sense mediated decay (NMD). The original allele for this mutation is of type ''. The table below shows the predicted structure of the gene transcripts after application of Flp and Cre (forming a 'Knockout-First, Post-Flp and Cre - Deletion, No Reporter' allele - more information on IKMC alleles can be found here). Click the 'view' button for each transcript to see the full prediction for that transcript.

Ensembl transcript id Ensembl Biotype Floxed transcript description Details
ENSMUST00000025968 protein_coding No protein product (NMD) view

Predicted translation:

MDLVTFLVLTLSSLILLSLWRQSCGRGSLPPGPTPFPIIGNFLQIDIKNVSQSLTNAHLVTPHSF*

Ensembl Exon ID Pfam Domains WildType Floxed
ENSMUSE00000544380 Cyt_P450 (26/457 aa) UTR + start codon + CDS UTR + start codon + CDS
ENSMUSE00001038252 Cyt_P450 (55/457 aa) CDS Deleted
ENSMUSE00001001927 Cyt_P450 (51/457 aa) CDS Deleted
ENSMUSE00000967539 Cyt_P450 (54/457 aa) CDS CDS + stop codon + UTR
ENSMUSE00001019958 Cyt_P450 (59/457 aa) CDS
ENSMUSE00001036192 Cyt_P450 (48/457 aa) CDS
ENSMUSE00001034435 Cyt_P450 (63/457 aa) CDS
ENSMUSE00001059312 Cyt_P450 (48/457 aa) CDS
ENSMUSE00000318105 Cyt_P450 (57/457 aa) CDS + stop codon + UTR
Legend: in frame deleted frameshifted

ES Cell Clones no data available

Targeting Vectors no data available

Intermediate Vectors no data available