IKMC Project Report - KOMP-CSD (ID: 40793)

Mtss1l MGI:3039591 ENSMUSG00000033763 OTTMUSG00000027473
Pre-pipeline Designs Vectors ES Cells Mice
Vector - Initial Attempt Unsuccessful

Mice no data available

Mutagenesis Predictions

This gene has 6 wild type transcripts, of which 4 are protein-coding. Following removal of the floxed region, 4 transcripts are predicted to produce a truncated protein product of which 2 may be subject to non-sense mediated decay (NMD). The original allele for this mutation is of type ''. The table below shows the predicted structure of the gene transcripts after application of Flp and Cre (forming a 'Knockout-First, Post-Flp and Cre - Deletion, No Reporter' allele - more information on IKMC alleles can be found here). Click the 'view' button for each transcript to see the full prediction for that transcript.

Ensembl transcript id Ensembl Biotype Floxed transcript description Details
ENSMUST00000052457 protein_coding No protein product (NMD) view

Predicted translation:

METAEKECGALGGLFQAIVNDMKSSYPIWEDFNSKAAKLHSQLRTTVLAAVAFLDAFQKVADMATNTRGATRDIGSALTR
MCMRHRSIETKLRQFTNALLESLINPLQERIEDWKKSANQLDKDHAKEYKRARHEIKKKSSDTLKLQKKARKGDQRPEGF
*

Ensembl Exon ID Pfam Domains WildType Floxed
ENSMUSE00000496434 IRSp53/MIM_homology_IMD (8/222 aa) UTR + start codon + CDS UTR + start codon + CDS
ENSMUSE00000978407 IRSp53/MIM_homology_IMD (21/222 aa) CDS CDS
ENSMUSE00001023175 IRSp53/MIM_homology_IMD (26/222 aa) CDS CDS
ENSMUSE00000983139 IRSp53/MIM_homology_IMD (29/222 aa) CDS CDS
ENSMUSE00001077758 IRSp53/MIM_homology_IMD (32/222 aa) CDS CDS
ENSMUSE00001087440 IRSp53/MIM_homology_IMD (26/222 aa) CDS CDS
ENSMUSE00001060402 IRSp53/MIM_homology_IMD (53/222 aa) CDS Deleted
ENSMUSE00001000582 IRSp53/MIM_homology_IMD (32/222 aa) CDS Deleted
ENSMUSE00000975760 CDS CDS + stop codon + UTR
ENSMUSE00000514848 CDS
ENSMUSE00000392209 CDS
ENSMUSE00000349861 CDS
ENSMUSE00000311736 CDS
ENSMUSE00000347347 CDS + stop codon + UTR
Legend: in frame deleted frameshifted
ENSMUST00000144041 protein_coding No protein product (NMD) view

Predicted translation:

MATNTRGATRDIGSALTRMCMRHRSIETKLRQFTNALLESLINPLQERIEDWKKSANQLDKDHAKEYKRARHEIKKKSSD
TLKLQKKARKGDQRPEGF*

Ensembl Exon ID Pfam Domains WildType Floxed
ENSMUSE00000757751 UTR UTR
ENSMUSE00001058262 UTR UTR
ENSMUSE00001005247 IRSp53/MIM_homology_IMD (6/174 aa) UTR + start codon + CDS UTR + start codon + CDS
ENSMUSE00000983139 IRSp53/MIM_homology_IMD (29/174 aa) CDS CDS
ENSMUSE00001077758 IRSp53/MIM_homology_IMD (32/174 aa) CDS CDS
ENSMUSE00001087440 IRSp53/MIM_homology_IMD (26/174 aa) CDS CDS
ENSMUSE00001060402 IRSp53/MIM_homology_IMD (53/174 aa) CDS Deleted
ENSMUSE00001000582 IRSp53/MIM_homology_IMD (32/174 aa) CDS Deleted
ENSMUSE00000975760 CDS CDS + stop codon + UTR
ENSMUSE00000514848 CDS
ENSMUSE00000392209 CDS
ENSMUSE00000349861 CDS
ENSMUSE00000311736 CDS
ENSMUSE00000815030 CDS + stop codon + UTR
Legend: in frame deleted frameshifted
ENSMUST00000141302 protein_coding No analysis available: incomplete transcript
ENSMUST00000149273 protein_coding No analysis available: incomplete transcript
ENSMUST00000133848 retained_intron Target region does not overlap transcript
ENSMUST00000141527 processed_transcript No analysis available: incomplete transcript
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ES Cell Clones no data available

Targeting Vectors no data available

Intermediate Vectors no data available