IKMC Project Report - KOMP-CSD (ID: 41011)

Ccdc36 MGI:3612242 ENSMUSG00000047220
Pre-pipeline Designs Vectors ES Cells Mice
Vector - Initial Attempt Unsuccessful

Mice no data available

Mutagenesis Predictions

This gene has 1 wild type transcripts, of which 1 are protein-coding. Following removal of the floxed region, 1 transcript is predicted to produce a truncated protein product of which 1 may be subject to non-sense mediated decay (NMD). The original allele for this mutation is of type ''. The table below shows the predicted structure of the gene transcripts after application of Flp and Cre (forming a 'Knockout-First, Post-Flp and Cre - Deletion, No Reporter' allele - more information on IKMC alleles can be found here). Click the 'view' button for each transcript to see the full prediction for that transcript.

Ensembl transcript id Ensembl Biotype Floxed transcript description Details
ENSMUST00000076592 protein_coding No protein product (NMD) view

Predicted translation:

MNFNVWNVKEMLSIPSGSGITKPSNWNNNQTDCSLSDSQFLFGSQFCPENSETLLPSLDAGACLRHPKQTQQNSVD*

Ensembl Exon ID Pfam Domains WildType Floxed
ENSMUSE00000479573 UTR + start codon + CDS UTR + start codon + CDS
ENSMUSE00000460823 CDS CDS
ENSMUSE00000463623 CDS Deleted
ENSMUSE00000466892 CDS CDS + stop codon + UTR
ENSMUSE00000462052 CDS
ENSMUSE00000474924 CDS
ENSMUSE00000473937 CDS + stop codon + UTR
Legend: in frame deleted frameshifted

ES Cell Clones no data available

Targeting Vectors no data available

Intermediate Vectors no data available