IKMC Project Report - NorCOMM (ID: 42757)

1600014C10Rik MGI:1919494 ENSMUSG00000054676 OTTMUSG00000042336
Pre-pipeline Designs Vectors ES Cells Mice
Vector - Initial Attempt Unsuccessful

Mice no data available

Mutagenesis Predictions

This gene has 9 wild type transcripts, of which 3 are protein-coding. Following removal of the floxed region, 3 transcripts are predicted to produce a truncated protein product of which 0 may be subject to non-sense mediated decay (NMD). The original allele for this mutation is of type ''. The table below shows the predicted structure of the gene transcripts after application of Flp and Cre (forming a 'Knockout-First, Post-Flp and Cre - Deletion, No Reporter' allele - more information on IKMC alleles can be found here). Click the 'view' button for each transcript to see the full prediction for that transcript.

Ensembl transcript id Ensembl Biotype Floxed transcript description Details
ENSMUST00000165308 protein_coding Residual N-terminal, unknown C-terminal view

Predicted translation:

MPIMVDDIMRLLCSISQERKMKAAVKHSGKGAMVAGAMAFVGGLVGGPPGIAV

Ensembl Exon ID Pfam Domains WildType Floxed
ENSMUSE00000901335 UTR UTR
ENSMUSE00001064889 UTR + start codon + CDS
ENSMUSE00000635238 CDS Deleted
ENSMUSE00000446563 CDS + stop codon + UTR Deleted
Legend: in frame deleted frameshifted
ENSMUST00000067854 protein_coding Residual N-terminal, unknown C-terminal view

Predicted translation:

MPIMVDDIMRLLCSISQERKMKAAVKHSGKGAMVAGAMAFVGGLVGGPPGIAV

Ensembl Exon ID Pfam Domains WildType Floxed
ENSMUSE00000500351 UTR UTR
ENSMUSE00001064889 UTR + start codon + CDS
ENSMUSE00000635238 CDS Deleted
ENSMUSE00000446563 CDS + stop codon + UTR Deleted
Legend: in frame deleted frameshifted
ENSMUST00000177983 protein_coding Target region does not overlap transcript
ENSMUST00000178207 processed_transcript No analysis available: incomplete transcript
ENSMUST00000178876 processed_transcript No analysis available: incomplete transcript
ENSMUST00000179525 processed_transcript No analysis available: incomplete transcript
ENSMUST00000179503 processed_transcript No analysis available: incomplete transcript
ENSMUST00000179992 processed_transcript No analysis available: incomplete transcript
ENSMUST00000178890 processed_transcript Target region does not overlap transcript
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ES Cell Clones no data available

Targeting Vectors no data available

Intermediate Vectors no data available