IKMC Project Report - EUCOMM (ID: 45211)

Ybx1 MGI:99146 ENSMUSG00000028639 OTTMUSG00000009259
Pre-pipeline Designs Vectors ES Cells Mice
Vector Unsuccessful - Project Terminated

Mice no data available

Mutagenesis Predictions

This gene has 7 wild type transcripts, of which 2 are protein-coding. Following removal of the floxed region, 2 transcripts are predicted to produce a truncated protein product of which 1 may be subject to non-sense mediated decay (NMD). The original allele for this mutation is of type ''. The table below shows the predicted structure of the gene transcripts after application of Flp and Cre (forming a 'Knockout-First, Post-Flp and Cre - Deletion, No Reporter' allele - more information on IKMC alleles can be found here). Click the 'view' button for each transcript to see the full prediction for that transcript.

Ensembl transcript id Ensembl Biotype Floxed transcript description Details
ENSMUST00000079644 protein_coding No protein product (NMD) view

Predicted translation:

MSSEAETQQPPAAPAAALSAADTKPGSTGSGAGSGGPGGLTSAAPAGGDKKVIATKVLGTVKWFNVRNGYGFINRLP*

Ensembl Exon ID Pfam Domains WildType Floxed
ENSMUSE00000781541 UTR + start codon + CDS UTR + start codon + CDS
ENSMUSE00001006811 CSP_DNA-bd (18/69 aa) CDS CDS
ENSMUSE00001079823 CSP_DNA-bd (12/69 aa) CDS Deleted
ENSMUSE00000525213 CSP_DNA-bd (30/69 aa) CDS CDS + stop codon + UTR
ENSMUSE00000483303 CSP_DNA-bd (10/69 aa) CDS
ENSMUSE00000497376 CDS
ENSMUSE00000498460 CDS + stop codon + UTR
ENSMUSE00000839196 UTR UTR
Legend: in frame deleted frameshifted
ENSMUST00000127737 protein_coding Target region does not overlap transcript
ENSMUST00000145976 processed_transcript Target region does not overlap transcript
ENSMUST00000139897 processed_transcript No analysis available: incomplete transcript
ENSMUST00000144992 processed_transcript Target region does not overlap transcript
ENSMUST00000142884 processed_transcript No analysis available: incomplete transcript
ENSMUST00000152733 processed_transcript Target region does not overlap transcript
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ES Cell Clones no data available

Targeting Vectors no data available

Intermediate Vectors no data available