IKMC Project Report - NorCOMM (ID: 42198)

0610009B22Rik MGI:1913300 ENSMUSG00000007777 OTTMUSG00000005608
Pre-pipeline Designs Vectors ES Cells Mice
ES Cells - Targeting Confirmed

Mice no data available

Mutagenesis Predictions

This gene has 2 wild type transcripts, of which 2 are protein-coding. Following removal of the floxed region, 2 transcripts are predicted to produce a truncated protein product of which 0 may be subject to non-sense mediated decay (NMD). This mutation is of type 'Deletion' (more information on IKMC alleles can be found here). The table below shows the predicted structure of the gene transcripts. Click the 'view' button for each transcript to see the full prediction for that transcript.

Ensembl transcript id Ensembl Biotype Floxed transcript description Details
ENSMUST00000007921 protein_coding No protein product
ENSMUST00000109098 protein_coding No protein product
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ES Cell Clones (Conditional Ready)

Note: These mutations can be made conditional by a "docking" procedure which uses the attP/puro docking site in the cassette.

Genome Browsers: Ensembl (mouse) - UCSC (mouse)
Tools: Southern Blot Tool
ES Cell Clone Targeting Vector Allele Allele Type Parental ES Cell Line Genbank File Mouse QC Data
order N01851P1_C_176W_B10 N01851P1_T_185.4_E01 Deletion (Promotor Driven Cassette) C2 view no no data reported    ( about )
order N01851P1_C_176W_C10 N01851P1_T_185.4_E01 Deletion (Promotor Driven Cassette) C2 view no no data reported    ( about )
order N01851P1_C_176W_D10 N01851P1_T_185.4_E01 Deletion (Promotor Driven Cassette) C2 view no no data reported    ( about )
order N01851P1_C_176W_D9 N01851P1_T_185.4_E01 Deletion (Promotor Driven Cassette) C2 view no no data reported    ( about )
order N01851P1_C_176W_E9 N01851P1_T_185.4_E01 Deletion (Promotor Driven Cassette) C2 view no no data reported    ( about )
order N01851P1_C_176W_F9 N01851P1_T_185.4_E01 Deletion (Promotor Driven Cassette) C2 view no no data reported    ( about )
order N01851P1_C_176W_G9 N01851P1_T_185.4_E01 Deletion (Promotor Driven Cassette) C2 view no no data reported    ( about )
order N01851P1_C_176W_H9 N01851P1_T_185.4_E01 Deletion (Promotor Driven Cassette) C2 view no no data reported    ( about )
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Targeting Vectors

Genome Browsers: Ensembl (mouse) - UCSC (mouse)
Design ID Vector Type Targeting Vector Cassette Backbone Genbank File
order 238213 Deletion (Promotor Driven Cassette) N01851P1_T_185.4_E01 L1L2_GOHANU L3L4_pZero_DTA_kan view

Intermediate Vectors

Design ID Vector Type Intermediate Vector
238213 Deletion N01851P1_I_185.4_E01